Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dihydroorotate dehydrogenase electron transfer subunit | DW869_04480 | Not Available | Positive | 1120878 - 1121657 | 28483.2 |
| dihydroorotate dehydrogenase | DW869_04485 | Not Available | Positive | 1121645 - 1122556 | 32305.3 |
| trna (guanosine(37)-n1)-methyltransferase trmd | DW869_04490 | Not Available | Negative | 1122922 - 1123596 | 25423.7 |
| dna ligase (nad(+)) liga | DW869_04495 | Not Available | Positive | 1123695 - 1125692 | 75145.7 |
| 4-hydroxy-tetrahydrodipicolinate synthase | DW869_04500 | Not Available | Positive | 1125794 - 1126687 | 32789.2 |
| Trna-arg | Not Available | Not Available | Positive | 1127052 - 1127128 | Not Available |
| Trna-arg | Not Available | Not Available | Positive | 1127363 - 1127436 | Not Available |
| patatin | DW869_04515 | Not Available | Negative | 1127526 - 1129835 | 87711.7 |
| molecular chaperone htpg | DW869_04520 | Not Available | Negative | 1129965 - 1132010 | 78240.3 |
| atp-dependent clp protease atp-binding subunit | DW869_04525 | Not Available | Negative | 1132119 - 1134665 | 95075.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

