Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| proline--trna ligase | DW869_04425 | Not Available | Positive | 1111506 - 1112996 | 56833.0 |
| atp-binding cassette domain-containing protein | DW869_04430 | Not Available | Positive | 1113079 - 1113699 | 22739.8 |
| abc transporter permease | DW869_04435 | Not Available | Positive | 1113708 - 1114505 | 29543.7 |
| hypothetical protein | DW869_04440 | Not Available | Positive | 1114564 - 1114842 | 10839.2 |
| nif3-like dinuclear metal center hexameric protein | DW869_04445 | Not Available | Positive | 1114904 - 1115998 | 40621.9 |
| hypothetical protein | DW869_04450 | Not Available | Positive | 1116007 - 1116798 | 30517.8 |
| hypothetical protein | DW869_04455 | Not Available | Negative | 1116899 - 1117348 | 17607.4 |
| amp nucleosidase | DW869_04460 | Not Available | Positive | 1117406 - 1118182 | 29142.2 |
| dna polymerase iii subunit delta | DW869_04465 | Not Available | Positive | 1118194 - 1119210 | 38857.2 |
| xre family transcriptional regulator | DW869_04475 | Not Available | Positive | 1120332 - 1120784 | 17319.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

