Phocaeicola vulgatus strain AM38-19

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AM38-19 is a Gram-positive, anaerobic, rod-shaped bacterium associated with the host Homo sapiens. It exhibits a cell arrangement characterized by singles and does not possess mobility, despite having flagella. This strain is mesophilic, thriving within a temperature range conducive to growth in moderate environments. The bacterium is notable for its biotic relationship as a free-living organism, suggesting it can survive independently, but it is also commonly found in association with human hosts. Phocaeicola vulgatus has a single replicon and is characterized by having two membranes, which is typical for Gram-positive bacteria. Given its anaerobic nature, Phocaeicola vulgatus strain AM38-19 plays a critical role in the human microbiome, particularly in anaerobic environments such as the gastrointestinal tract. The ability to thrive in these conditions may contribute to its ecological role in digestion and nutrient absorption, as well as its potential influence on human health. Understanding the traits and ecological interactions of this strain can provide insights into its contributions to gut microbiota dynamics and overall host health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AM38-19

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AM38-19
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AM38-19 AM38-19.Scaf101, whole genome

Gene Summary

Adenine Count

1498710 bp

Thymine Count

1452742 bp

Guanine Count

1040716 bp

Cytosine Count

1113152 bp

Genome Length

5106187 bp

Protein-coding Genes

4161 genes

Non-Coding Genes

82 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tetr/acrr family transcriptional regulatorDW869_04375Not AvailableNegative1101416 - 110203323930.1
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinaseDW869_04380Not AvailableNegative1102478 - 110285214212.0
3-deoxy-manno-octulosonate cytidylyltransferaseDW869_04385Not AvailablePositive1102931 - 110368928105.6
insulinase family proteinDW869_04390Not AvailablePositive1103690 - 110497648727.6
phosphatidylinositol-4-phosphate 5-kinaseDW869_04395Not AvailablePositive1105048 - 110616642526.8
inositol monophosphataseDW869_04400Not AvailablePositive1106174 - 110696229098.5
duf2461 domain-containing proteinDW869_04405Not AvailablePositive1107038 - 110770325851.7
yhch/yjgk/yial family proteinDW869_04410Not AvailablePositive1107740 - 110818016248.5
1,4-alpha-glucan-branching enzymeDW869_04415Not AvailablePositive1108209 - 111023678102.2
hypothetical proteinDW869_04420Not AvailablePositive1110240 - 111139144032.7

Displaying genes 861 – 870 of 4243 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.