Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor | DW869_04275 | Not Available | Positive | 1079224 - 1079727 | 19667.6 |
| biotin/lipoyl-binding protein | DW869_04280 | Not Available | Positive | 1079917 - 1081692 | 66738.8 |
| duf1460 domain-containing protein | DW869_04285 | Not Available | Positive | 1081818 - 1082702 | 33269.5 |
| monofunctional biosynthetic peptidoglycan transglycosylase | DW869_04290 | Not Available | Negative | 1082674 - 1083396 | 27910.3 |
| ompa family protein | DW869_04295 | Not Available | Negative | 1083525 - 1084244 | 24484.1 |
| mate family efflux transporter | DW869_04300 | Not Available | Negative | 1084293 - 1085636 | 49290.3 |
| serine hydroxymethyltransferase | DW869_04305 | Not Available | Negative | 1085835 - 1087115 | 46829.6 |
| port family protein | DW869_04310 | Not Available | Negative | 1087362 - 1088081 | 27401.5 |
| flavin reductase family protein | DW869_04315 | Not Available | Negative | 1088091 - 1088678 | 21914.5 |
| aspartate carbamoyltransferase regulatory subunit | DW869_04320 | Not Available | Negative | 1088684 - 1089151 | 17408.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

