Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha/beta hydrolase | DW869_04225 | Not Available | Positive | 1065175 - 1066230 | 39316.1 |
| duf3737 family protein | DW869_04230 | Not Available | Positive | 1066346 - 1067212 | 33156.1 |
| pyridoxal phosphate-dependent aminotransferase | DW869_04235 | Not Available | Positive | 1067222 - 1068385 | 44389.1 |
| s9 family peptidase | DW869_04240 | Not Available | Negative | 1069723 - 1071843 | 79852.0 |
| hypothetical protein | DW869_04245 | Not Available | Positive | 1071908 - 1072141 | 8734.26 |
| membrane protein insertase yidc | DW869_04250 | Not Available | Negative | 1072071 - 1073936 | 70945.9 |
| ctp synthase | DW869_04255 | Not Available | Negative | 1073976 - 1075574 | 60081.3 |
| duf3078 domain-containing protein | DW869_04260 | Not Available | Positive | 1075784 - 1077178 | 53446.5 |
| udp-n-acetyl glucosamine 2-epimerase | DW869_04265 | Not Available | Negative | 1077279 - 1078367 | 40251.0 |
| trimeric intracellular cation channel family protein | DW869_04270 | Not Available | Positive | 1078451 - 1079065 | 22186.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

