Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate--ammonia ligase | DW869_04125 | Not Available | Positive | 1043048 - 1044088 | 39770.2 |
| uracil-dna glycosylase | DW869_04130 | Not Available | Positive | 1044206 - 1044868 | 24929.5 |
| lps-assembly protein lptd | DW869_04135 | Not Available | Negative | 1044957 - 1047692 | 103867.0 |
| hdig domain-containing protein | DW869_04140 | Not Available | Negative | 1047783 - 1048319 | 20311.5 |
| duf1343 domain-containing protein | DW869_04145 | Not Available | Positive | 1048373 - 1049533 | 43609.9 |
| s26 family signal peptidase | DW869_04150 | Not Available | Negative | 1049561 - 1050028 | 18099.4 |
| hypothetical protein | DW869_04155 | Not Available | Negative | 1049997 - 1050911 | 33762.3 |
| abc transporter atp-binding protein | DW869_04160 | Not Available | Negative | 1050895 - 1052547 | 61649.2 |
| hypothetical protein | DW869_04165 | Not Available | Negative | 1052555 - 1053640 | 41311.2 |
| pqqd family protein | DW869_04170 | Not Available | Negative | 1053678 - 1053947 | 10032.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

