Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cyclically-permuted mutarotase family protein | DW869_04075 | Not Available | Negative | 1024906 - 1026033 | 40499.5 |
| beta-n-acetylhexosaminidase | DW869_04080 | Not Available | Negative | 1026220 - 1028544 | 86312.9 |
| glycoside hydrolase family 2 protein | DW869_04085 | Not Available | Negative | 1028561 - 1031128 | 98692.7 |
| sialate o-acetylesterase | DW869_04090 | Not Available | Negative | 1031155 - 1033218 | 77619.1 |
| sialate o-acetylesterase | DW869_04095 | Not Available | Negative | 1033215 - 1033880 | 25159.8 |
| beta-n-acetylhexosaminidase | DW869_04100 | Not Available | Negative | 1033882 - 1035888 | 77071.5 |
| sialidase | DW869_04105 | Not Available | Negative | 1035892 - 1037532 | 60285.2 |
| susd family outer membrane lipoprotein nanu | DW869_04110 | Not Available | Negative | 1037665 - 1039167 | 56986.5 |
| tonb-dependent receptor | DW869_04115 | Not Available | Negative | 1039187 - 1042462 | 121691.0 |
| Trna-arg | Not Available | Not Available | Positive | 1042771 - 1042845 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

