Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | DW869_00270 | Not Available | Negative | 80038 - 83439 | 124973.0 |
| glycoside hydrolase family 92 protein | DW869_00280 | Not Available | Negative | 83728 - 86040 | 87868.8 |
| glycoside hydrolase family 92 protein | DW869_00285 | Not Available | Negative | 86070 - 88352 | 86532.7 |
| duf4974 domain-containing protein | DW869_00290 | Not Available | Negative | 88370 - 89362 | 37996.7 |
| rna polymerase sigma-70 factor | DW869_00295 | Not Available | Negative | 89391 - 89966 | 22546.4 |
| glycoside hydrolase family 92 protein | DW869_00300 | Not Available | Negative | 90171 - 92393 | 83529.0 |
| hypothetical protein | DW869_00305 | Not Available | Negative | 92488 - 93183 | 26719.6 |
| hypothetical protein | DW869_00310 | Not Available | Positive | 93343 - 94029 | 25460.4 |
| arac family transcriptional regulator | DW869_00315 | Not Available | Positive | 94038 - 94853 | 31118.5 |
| general stress protein | DW869_00320 | Not Available | Positive | 94927 - 95334 | 15227.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

