Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p)h-dependent glycerol-3-phosphate dehydrogenase | DW869_03925 | Not Available | Positive | 984115 - 985110 | 37117.2 |
| glucose-6-phosphate isomerase | DW869_03930 | Not Available | Positive | 985124 - 986467 | 49050.8 |
| had family hydrolase | DW869_03935 | Not Available | Positive | 986617 - 987351 | 27124.5 |
| hypothetical protein | DW869_03940 | Not Available | Negative | 987464 - 988708 | 47319.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_03945 | Not Available | Negative | 988721 - 990310 | 60801.8 |
| susc/raga family tonb-linked outer membrane protein | DW869_03950 | Not Available | Negative | 990326 - 994063 | 139710.0 |
| duf4974 domain-containing protein | DW869_03955 | Not Available | Negative | 994211 - 995293 | 41095.2 |
| sigma-70 family rna polymerase sigma factor | DW869_03960 | Not Available | Negative | 995506 - 996141 | 24920.2 |
| rok family transcriptional regulator | DW869_03965 | Not Available | Negative | 996256 - 997461 | 44586.1 |
| n-acetylneuraminate lyase | DW869_03970 | Not Available | Positive | 997767 - 998681 | 33910.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

