Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| siderophore biosynthesis protein | DW869_03875 | Not Available | Negative | 974054 - 974680 | 24533.4 |
| gliding motility-associated protein glde | DW869_03880 | Not Available | Negative | 974689 - 976041 | 50819.5 |
| single-stranded dna-binding protein | DW869_03885 | Not Available | Negative | 976078 - 976545 | 17305.4 |
| a/g-specific adenine glycosylase | DW869_03890 | Not Available | Negative | 976560 - 977618 | 40626.7 |
| integration host factor subunit beta | DW869_03895 | Not Available | Positive | 977798 - 978073 | 10172.4 |
| ribonuclease e/g | DW869_03900 | Not Available | Positive | 978312 - 979886 | 59689.8 |
| n-acetylmuramoyl-l-alanine amidase | DW869_03905 | Not Available | Negative | 980058 - 980864 | 30760.1 |
| tlpa family protein disulfide reductase | DW869_03910 | Not Available | Negative | 980871 - 981413 | 20293.0 |
| hypothetical protein | DW869_03915 | Not Available | Positive | 981645 - 982253 | 23096.2 |
| lysine--trna ligase | DW869_03920 | Not Available | Positive | 982328 - 984058 | 66465.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

