Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tryptophan synthase subunit beta | DW869_03825 | Not Available | Positive | 963066 - 964265 | 43987.0 |
| anthranilate synthase component i family protein | DW869_03830 | Not Available | Positive | 964326 - 965726 | 52812.4 |
| aminodeoxychorismate/anthranilate synthase component ii | DW869_03835 | Not Available | Positive | 965739 - 966329 | 21601.0 |
| anthranilate phosphoribosyltransferase | DW869_03840 | Not Available | Positive | 966351 - 967346 | 36463.1 |
| indole-3-glycerol phosphate synthase trpc | DW869_03845 | Not Available | Positive | 967385 - 968173 | 29293.4 |
| phosphoribosylanthranilate isomerase | DW869_03850 | Not Available | Positive | 968186 - 968803 | 22898.4 |
| tryptophan synthase subunit alpha | DW869_03855 | Not Available | Positive | 968800 - 969576 | 28989.2 |
| type i asparaginase | DW869_03860 | Not Available | Positive | 969854 - 970897 | 38739.7 |
| dna-binding response regulator | DW869_03865 | Not Available | Positive | 971094 - 971783 | 26203.9 |
| two-component sensor histidine kinase | DW869_03870 | Not Available | Positive | 971802 - 973583 | 68725.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

