Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l20 | DW869_03670 | Not Available | Negative | 925505 - 925855 | 13181.3 |
| 50s ribosomal protein l35 | DW869_03675 | Not Available | Negative | 925967 - 926164 | 7367.31 |
| translation initiation factor if-3 | DW869_03680 | Not Available | Negative | 926236 - 926832 | 22643.4 |
| threonine--trna ligase | DW869_03685 | Not Available | Negative | 926948 - 928888 | 74217.2 |
| tetratricopeptide repeat protein | DW869_03690 | Not Available | Negative | 928969 - 930978 | 77306.4 |
| peptide deformylase | DW869_03695 | Not Available | Negative | 931051 - 931605 | 21020.7 |
| holliday junction resolvase ruvx | DW869_03700 | Not Available | Negative | 931629 - 932048 | 15859.5 |
| hypothetical protein | DW869_03705 | Not Available | Positive | 932255 - 933493 | 47660.4 |
| duf3869 domain-containing protein | DW869_03710 | Not Available | Positive | 933504 - 934352 | 30479.6 |
| ompa family protein | DW869_03715 | Not Available | Positive | 934396 - 935490 | 39293.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

