Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW869_03620 | Not Available | Positive | 914716 - 915108 | 14826.2 |
| n-acetylmuramoyl-l-alanine amidase | DW869_03625 | Not Available | Positive | 915247 - 915666 | 15438.4 |
| transcriptional regulator | DW869_03630 | Not Available | Negative | 915732 - 916562 | 31630.1 |
| hypothetical protein | DW869_03635 | Not Available | Negative | 916986 - 919025 | 79628.4 |
| alpha-l-fucosidase | DW869_03640 | Not Available | Negative | 919044 - 920393 | 51875.6 |
| dna/rna non-specific endonuclease | DW869_03645 | Not Available | Positive | 920518 - 921375 | 32331.8 |
| alpha-n-arabinofuranosidase | DW869_03650 | Not Available | Negative | 921465 - 922988 | 57343.5 |
| hypothetical protein | DW869_03655 | Not Available | Positive | 923002 - 923187 | 7166.81 |
| endolytic transglycosylase mltg | DW869_03660 | Not Available | Positive | 923189 - 924223 | 39576.9 |
| 4fe-4s ferredoxin | DW869_03665 | Not Available | Negative | 924273 - 925040 | 28610.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

