Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM38-19
Accession NumberQSHD00000000.1
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf4981 domain-containing protein | DW869_00220 | Not Available | + | 63227 - 66322 | 117601.0 |
| tonb-dependent receptor | DW869_00225 | Not Available | + | 66718 - 69285 | 97396.0 |
| rna polymerase sigma-70 factor | DW869_00230 | Not Available | + | 69340 - 69867 | 20776.9 |
| duf4974 domain-containing protein | DW869_00235 | Not Available | + | 69864 - 70874 | 38656.1 |
| glycosyl hydrolase family 109 protein 2 | DW869_00240 | Not Available | - | 70997 - 72238 | 47371.7 |
| glycosidase | DW869_00245 | Not Available | - | 72697 - 73698 | 37626.8 |
| mfs transporter | DW869_00250 | Not Available | - | 73731 - 75029 | 47974.8 |
| glycoside hydrolase family 97 protein | DW869_00255 | Not Available | - | 75153 - 77168 | 75845.2 |
| endonuclease | DW869_00260 | Not Available | - | 77356 - 78201 | 31930.9 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DW869_00265 | Not Available | - | 78245 - 80014 | 66868.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
