Phocaeicola vulgatus strain AM38-19

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AM38-19 is a Gram-positive, rod-shaped bacterium that typically exists as single cells and is classified as an anaerobe, indicating that it thrives in environments devoid of oxygen. This strain is host-associated, suggesting a close relationship with a particular host organism, which may play a role in its ecological niche. The anaerobic nature of P. vulgatus strain AM38-19 implies that it is adapted to environments where oxygen levels are low, likely including the gastrointestinal tracts of various hosts. In such anaerobic habitats, this microbe may participate in critical biochemical processes, including fermentation pathways, which could contribute to the host's metabolic balance. The presence of P. vulgatus strain AM38-19 in host-associated environments may indicate its potential role in symbiotic relationships, possibly aiding in nutrient absorption or contributing to the host's microbial diversity. Understanding the specific interactions between this strain and its host could provide insights into its functional significance within the microbial community, as well as its overall impact on host health. Further research could elucidate the ecological roles and benefits conferred by this bacterium in its natural habitat.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AM38-19
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AM38-19

Accession NumberQSHD00000000.1

Gene Summary

Adenine Count

1498710 bp

Thymine Count

1452742 bp

Guanine Count

1040716 bp

Cytosine Count

1113152 bp

Genome Length

5106187 bp

Protein-coding Genes

4161 genes

Non-Coding Genes

82 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
duf4981 domain-containing proteinDW869_00220Not Available+63227 - 66322117601.0
tonb-dependent receptorDW869_00225Not Available+66718 - 6928597396.0
rna polymerase sigma-70 factorDW869_00230Not Available+69340 - 6986720776.9
duf4974 domain-containing proteinDW869_00235Not Available+69864 - 7087438656.1
glycosyl hydrolase family 109 protein 2DW869_00240Not Available-70997 - 7223847371.7
glycosidaseDW869_00245Not Available-72697 - 7369837626.8
mfs transporterDW869_00250Not Available-73731 - 7502947974.8
glycoside hydrolase family 97 proteinDW869_00255Not Available-75153 - 7716875845.2
endonucleaseDW869_00260Not Available-77356 - 7820131930.9
susd/ragb family nutrient-binding outer membrane lipoproteinDW869_00265Not Available-78245 - 8001466868.9

Displaying genes 61 – 70 of 4243 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites