Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminopeptidase | DW869_03410 | Not Available | Negative | 870512 - 871702 | 45290.6 |
| peptidase | DW869_03415 | Not Available | Negative | 871734 - 873332 | 60227.9 |
| crp/fnr family transcriptional regulator | DW869_03420 | Not Available | Positive | 873475 - 874053 | 22582.6 |
| duf3943 domain-containing protein | DW869_03425 | Not Available | Negative | 874050 - 875525 | 56401.4 |
| hypothetical protein | DW869_03430 | Not Available | Negative | 875564 - 876949 | 48529.1 |
| long-chain fatty acid--coa ligase | DW869_03435 | Not Available | Negative | 877202 - 878860 | 62504.7 |
| dihydroorotate dehydrogenase-like protein | DW869_03440 | Not Available | Negative | 879037 - 880011 | 35625.3 |
| yggs family pyridoxal phosphate-dependent enzyme | DW869_03445 | Not Available | Negative | 880025 - 880693 | 25398.4 |
| duf4494 domain-containing protein | DW869_03450 | Not Available | Negative | 880727 - 881209 | 18209.6 |
| fucose isomerase | DW869_03455 | Not Available | Negative | 881305 - 882540 | 46189.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

