Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamate decarboxylase | DW869_03310 | Not Available | Negative | 847609 - 849057 | 54644.7 |
| mfs transporter | DW869_03315 | Not Available | Positive | 849315 - 850505 | 43366.0 |
| dmt family transporter | DW869_03320 | Not Available | Positive | 850542 - 851462 | 33682.5 |
| threonine ammonia-lyase | DW869_03325 | Not Available | Positive | 851659 - 852855 | 42410.4 |
| rsec/mucc family positive regulator of sigma(e) | DW869_03330 | Not Available | Positive | 853034 - 853462 | 15752.6 |
| fe-s cluster domain-containing protein | DW869_03335 | Not Available | Positive | 853483 - 854436 | 32597.8 |
| electron transport complex subunit rsxc | DW869_03340 | Not Available | Positive | 854476 - 855813 | 47119.8 |
| rnfabcdge type electron transport complex subunit d | DW869_03345 | Not Available | Positive | 855828 - 856817 | 35342.5 |
| rnfabcdge type electron transport complex subunit g | DW869_03350 | Not Available | Positive | 856814 - 857608 | 27128.0 |
| electron transport complex subunit e | DW869_03355 | Not Available | Positive | 857623 - 858207 | 20626.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

