Phocaeicola vulgatus strain AM38-19

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AM38-19 is a Gram-positive, anaerobic, rod-shaped bacterium associated with the host Homo sapiens. It exhibits a cell arrangement characterized by singles and does not possess mobility, despite having flagella. This strain is mesophilic, thriving within a temperature range conducive to growth in moderate environments. The bacterium is notable for its biotic relationship as a free-living organism, suggesting it can survive independently, but it is also commonly found in association with human hosts. Phocaeicola vulgatus has a single replicon and is characterized by having two membranes, which is typical for Gram-positive bacteria. Given its anaerobic nature, Phocaeicola vulgatus strain AM38-19 plays a critical role in the human microbiome, particularly in anaerobic environments such as the gastrointestinal tract. The ability to thrive in these conditions may contribute to its ecological role in digestion and nutrient absorption, as well as its potential influence on human health. Understanding the traits and ecological interactions of this strain can provide insights into its contributions to gut microbiota dynamics and overall host health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AM38-19

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AM38-19
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AM38-19 AM38-19.Scaf101, whole genome

Gene Summary

Adenine Count

1498710 bp

Thymine Count

1452742 bp

Guanine Count

1040716 bp

Cytosine Count

1113152 bp

Genome Length

5106187 bp

Protein-coding Genes

4161 genes

Non-Coding Genes

82 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
l-rhamnose isomeraseDW869_00165Not AvailablePositive45393 - 4664947566.5
l-rhamnose/proton symporter rhatDW869_00170Not AvailablePositive46742 - 4776136173.2
rhamnulose-1-phosphate aldolaseDW869_00175Not AvailablePositive47847 - 4865630253.7
duf4251 domain-containing proteinDW869_00180Not AvailablePositive48865 - 4936218492.1
right-handed parallel beta-helix repeat-containing proteinDW869_00185Not AvailableNegative49468 - 5098255846.1
ragb/susd family nutrient uptake outer membrane proteinDW869_00190Not AvailableNegative51151 - 5277059890.2
tonb-dependent receptorDW869_00195Not AvailableNegative52782 - 55853114451.0
arac family transcriptional regulatorDW869_00205Not AvailablePositive60302 - 6122235142.8
lytic transglycosylase domain-containing proteinDW869_00210Not AvailablePositive61230 - 6222837425.9
ion transporterDW869_00215Not AvailableNegative62254 - 6311132735.9

Displaying genes 51 – 60 of 4243 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.