Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-rhamnose isomerase | DW869_00165 | Not Available | Positive | 45393 - 46649 | 47566.5 |
| l-rhamnose/proton symporter rhat | DW869_00170 | Not Available | Positive | 46742 - 47761 | 36173.2 |
| rhamnulose-1-phosphate aldolase | DW869_00175 | Not Available | Positive | 47847 - 48656 | 30253.7 |
| duf4251 domain-containing protein | DW869_00180 | Not Available | Positive | 48865 - 49362 | 18492.1 |
| right-handed parallel beta-helix repeat-containing protein | DW869_00185 | Not Available | Negative | 49468 - 50982 | 55846.1 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_00190 | Not Available | Negative | 51151 - 52770 | 59890.2 |
| tonb-dependent receptor | DW869_00195 | Not Available | Negative | 52782 - 55853 | 114451.0 |
| arac family transcriptional regulator | DW869_00205 | Not Available | Positive | 60302 - 61222 | 35142.8 |
| lytic transglycosylase domain-containing protein | DW869_00210 | Not Available | Positive | 61230 - 62228 | 37425.9 |
| ion transporter | DW869_00215 | Not Available | Negative | 62254 - 63111 | 32735.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

