Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| asparagine synthase b | DW869_02685 | Not Available | Negative | 702285 - 703955 | 62874.7 |
| glutamate synthase subunit beta | DW869_02690 | Not Available | Negative | 703972 - 705312 | 48726.7 |
| glutamate synthase large subunit | DW869_02695 | Not Available | Negative | 705337 - 709815 | 164855.0 |
| diaminopimelate epimerase | DW869_02700 | Not Available | Positive | 710339 - 711181 | 30296.6 |
| ll-diaminopimelate aminotransferase | DW869_02705 | Not Available | Positive | 711228 - 712457 | 45892.9 |
| hypothetical protein | DW869_02710 | Not Available | Positive | 712574 - 713299 | 25603.7 |
| p-ii family nitrogen regulator | DW869_02715 | Not Available | Positive | 713415 - 713771 | 13455.3 |
| ammonium transporter | DW869_02720 | Not Available | Positive | 713847 - 715205 | 47593.4 |
| glutamine synthetase type iii | DW869_02725 | Not Available | Positive | 715263 - 717452 | 82007.6 |
| glutamine--fructose-6-phosphate transaminase (isomerizing) | DW869_02730 | Not Available | Positive | 717766 - 719610 | 67642.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

