Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-galactosidase | DW869_02520 | Not Available | Positive | 662844 - 665732 | 108936.0 |
| exopolygalacturonase | DW869_02525 | Not Available | Positive | 665774 - 667078 | 49114.7 |
| duf4858 domain-containing protein | DW869_02530 | Not Available | Negative | 667230 - 667793 | 21541.2 |
| bifunctional udp-n-acetylmuramoyl-tripeptide:d-alanyl-d-alanine ligase/alanine racemase | DW869_02535 | Not Available | Negative | 667883 - 670348 | 92858.0 |
| gscfa domain protein | DW869_02540 | Not Available | Negative | 670324 - 671310 | 38641.5 |
| 1-deoxy-d-xylulose-5-phosphate synthase | DW869_02545 | Not Available | Positive | 671403 - 673301 | 70238.9 |
| trk system potassium transporter trka | DW869_02550 | Not Available | Positive | 673314 - 674654 | 49307.5 |
| trkh family potassium uptake protein | DW869_02555 | Not Available | Positive | 674654 - 676108 | 53478.3 |
| hypothetical protein | DW869_02560 | Not Available | Positive | 676211 - 676588 | 14702.8 |
| nadh-quinone oxidoreductase subunit a | DW869_02565 | Not Available | Positive | 676692 - 677042 | 13065.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

