Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2264 domain-containing protein | DW869_02405 | Not Available | Negative | 622960 - 624189 | 46619.4 |
| glucuronyl hydrolase | DW869_02410 | Not Available | Negative | 624179 - 625369 | 45523.8 |
| helix-turn-helix domain-containing protein | DW869_02420 | Not Available | Negative | 628525 - 631311 | 106157.0 |
| glycoside hydrolase | DW869_02425 | Not Available | Negative | 631463 - 633679 | 84179.7 |
| glycoside hydrolase family 2 protein | DW869_02430 | Not Available | Negative | 633690 - 636167 | 93538.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_02435 | Not Available | Negative | 636385 - 638436 | 78080.4 |
| susc/raga family tonb-linked outer membrane protein | DW869_02440 | Not Available | Negative | 638449 - 641997 | 130970.0 |
| duf4974 domain-containing protein | DW869_02445 | Not Available | Negative | 642151 - 643095 | 35903.4 |
| rna polymerase sigma-70 factor | DW869_02450 | Not Available | Negative | 643215 - 643802 | 22839.5 |
| duf1573 domain-containing protein | DW869_02455 | Not Available | Negative | 643884 - 644165 | 10436.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

