Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | DW869_02355 | Not Available | Positive | 601337 - 602812 | 54265.1 |
| dna helicase | DW869_02360 | Not Available | Negative | 602866 - 606192 | 128311.0 |
| hypothetical protein | DW869_02365 | Not Available | Negative | 606217 - 606954 | 27873.3 |
| duf4038 domain-containing protein | DW869_02370 | Not Available | Negative | 607051 - 608514 | 55566.9 |
| arabinosidase | DW869_02375 | Not Available | Negative | 608584 - 609588 | 38245.8 |
| hybrid sensor histidine kinase/response regulator | DW869_02380 | Not Available | Negative | 609703 - 613980 | 163395.0 |
| tonb-dependent receptor | DW869_02385 | Not Available | Positive | 614235 - 617405 | 118015.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_02390 | Not Available | Positive | 617423 - 619429 | 74841.6 |
| glycoside hydrolase family 88 protein | DW869_02395 | Not Available | Positive | 619495 - 620901 | 53401.7 |
| aldehyde dehydrogenase | DW869_02400 | Not Available | Negative | 621108 - 622544 | 52581.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

