Phocaeicola vulgatus strain AM38-19

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AM38-19 is a Gram-positive, anaerobic, rod-shaped bacterium associated with the host Homo sapiens. It exhibits a cell arrangement characterized by singles and does not possess mobility, despite having flagella. This strain is mesophilic, thriving within a temperature range conducive to growth in moderate environments. The bacterium is notable for its biotic relationship as a free-living organism, suggesting it can survive independently, but it is also commonly found in association with human hosts. Phocaeicola vulgatus has a single replicon and is characterized by having two membranes, which is typical for Gram-positive bacteria. Given its anaerobic nature, Phocaeicola vulgatus strain AM38-19 plays a critical role in the human microbiome, particularly in anaerobic environments such as the gastrointestinal tract. The ability to thrive in these conditions may contribute to its ecological role in digestion and nutrient absorption, as well as its potential influence on human health. Understanding the traits and ecological interactions of this strain can provide insights into its contributions to gut microbiota dynamics and overall host health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AM38-19

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AM38-19
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AM38-19 AM38-19.Scaf101, whole genome

Gene Summary

Adenine Count

1498710 bp

Thymine Count

1452742 bp

Guanine Count

1040716 bp

Cytosine Count

1113152 bp

Genome Length

5106187 bp

Protein-coding Genes

4161 genes

Non-Coding Genes

82 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
xylan 1,4-beta-xylosidaseDW869_02305Not AvailableNegative581063 - 58256256463.8
ragb/susd family nutrient uptake outer membrane proteinDW869_02310Not AvailableNegative582871 - 58483573508.7
tonb-dependent receptorDW869_02315Not AvailableNegative584842 - 588006116975.0
glycoside hydrolaseDW869_02320Not AvailableNegative588254 - 59027576152.4
ragb/susd family nutrient uptake outer membrane proteinDW869_02325Not AvailableNegative590662 - 59281580055.9
tonb-dependent receptorDW869_02330Not AvailableNegative592819 - 596049118672.0
pectin esteraseDW869_02335Not AvailableNegative596267 - 59721735857.5
glycoside hydrolase family 88 proteinDW869_02340Not AvailableNegative597232 - 59846147082.1
pts sugar transporter subunit iicDW869_02345Not AvailablePositive598751 - 60014250004.1
5-dehydro-4-deoxy-d-glucuronate isomeraseDW869_02350Not AvailablePositive600161 - 60111735966.2

Displaying genes 461 – 470 of 4243 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.