Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xylan 1,4-beta-xylosidase | DW869_02305 | Not Available | Negative | 581063 - 582562 | 56463.8 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_02310 | Not Available | Negative | 582871 - 584835 | 73508.7 |
| tonb-dependent receptor | DW869_02315 | Not Available | Negative | 584842 - 588006 | 116975.0 |
| glycoside hydrolase | DW869_02320 | Not Available | Negative | 588254 - 590275 | 76152.4 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_02325 | Not Available | Negative | 590662 - 592815 | 80055.9 |
| tonb-dependent receptor | DW869_02330 | Not Available | Negative | 592819 - 596049 | 118672.0 |
| pectin esterase | DW869_02335 | Not Available | Negative | 596267 - 597217 | 35857.5 |
| glycoside hydrolase family 88 protein | DW869_02340 | Not Available | Negative | 597232 - 598461 | 47082.1 |
| pts sugar transporter subunit iic | DW869_02345 | Not Available | Positive | 598751 - 600142 | 50004.1 |
| 5-dehydro-4-deoxy-d-glucuronate isomerase | DW869_02350 | Not Available | Positive | 600161 - 601117 | 35966.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

