Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methylenetetrahydrofolate reductase | DW869_02145 | Not Available | Positive | 533044 - 533997 | 36211.4 |
| dna polymerase iii subunit delta | DW869_02150 | Not Available | Positive | 534025 - 535149 | 43533.9 |
| hypothetical protein | DW869_02155 | Not Available | Positive | 535239 - 536753 | 57696.9 |
| gliding motility lipoprotein gldh | DW869_02160 | Not Available | Positive | 536716 - 537213 | 18792.5 |
| rod shape-determining protein roda | DW869_02165 | Not Available | Negative | 537217 - 538671 | 54268.6 |
| penicillin-binding protein 2 | DW869_02170 | Not Available | Negative | 538652 - 540502 | 69195.5 |
| rod shape-determining protein mred | DW869_02175 | Not Available | Negative | 540502 - 541002 | 18956.0 |
| rod shape-determining protein mrec | DW869_02180 | Not Available | Negative | 541011 - 541859 | 31395.4 |
| rod shape-determining protein | DW869_02185 | Not Available | Negative | 541965 - 542987 | 36937.0 |
| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolase purh | DW869_02190 | Not Available | Negative | 543100 - 544623 | 56250.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

