Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii toxin-antitoxin system mrna interferase toxin, rele/stbe family | DW869_22030 | Not Available | Positive | 5076638 - 5076913 | 10689.9 |
| hypothetical protein | DW869_22035 | Not Available | Positive | 5076924 - 5077121 | 7528.7 |
| hypothetical protein | DW869_22040 | Not Available | Positive | 5077315 - 5077614 | 11797.2 |
| mobilization protein | DW869_22045 | Not Available | Positive | 5077611 - 5078405 | 29457.8 |
| hypothetical protein | DW869_22050 | Not Available | Positive | 5078362 - 5078814 | 17523.8 |
| charged multivesicular body protein 2b-b | DW869_22055 | Not Available | Positive | 5078833 - 5079063 | 8379.17 |
| replication initiation protein | DW869_22060 | Not Available | Negative | 5079102 - 5080106 | 39162.5 |
| hypothetical protein | DW869_22065 | Not Available | Negative | 5080057 - 5080242 | 7198.52 |
| atp-dependent helicase | DW869_22070 | Not Available | Negative | 5080471 - 5081081 | 23464.3 |
| hypothetical protein | DW869_22075 | Not Available | Negative | 5081092 - 5081901 | 30766.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

