Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase | DW869_21710 | Not Available | Negative | 5019096 - 5020178 | 41020.0 |
| hypothetical protein | DW869_21715 | Not Available | Negative | 5020281 - 5021498 | 46982.2 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | DW869_21720 | Not Available | Negative | 5021862 - 5022728 | 31372.7 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | DW869_21725 | Not Available | Negative | 5022750 - 5023334 | 21446.7 |
| nad-dependent deacylase | DW869_21730 | Not Available | Positive | 5023462 - 5024160 | 25715.9 |
| rubredoxin | DW869_21735 | Not Available | Positive | 5024235 - 5024399 | 5868.75 |
| polyribonucleotide nucleotidyltransferase | DW869_21740 | Not Available | Negative | 5024584 - 5026719 | 78631.8 |
| duf4369 domain-containing protein | DW869_21745 | Not Available | Positive | 5026935 - 5028083 | 42886.3 |
| transcription elongation factor grea | DW869_21750 | Not Available | Positive | 5028284 - 5028748 | 16780.4 |
| hit family protein | DW869_21755 | Not Available | Positive | 5028800 - 5029207 | 15016.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

