Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ketol-acid reductoisomerase | DW869_21595 | Not Available | Positive | 4993874 - 4994917 | 38168.5 |
| energy transducer tonb | DW869_21600 | Not Available | Positive | 4995045 - 4996130 | 41925.6 |
| rna polymerase sigma-70 factor | DW869_21605 | Not Available | Positive | 4996597 - 4997184 | 22570.8 |
| duf4974 domain-containing protein | DW869_21610 | Not Available | Positive | 4997269 - 4998222 | 36980.2 |
| susc/raga family tonb-linked outer membrane protein | DW869_21615 | Not Available | Positive | 4998366 - 5001758 | 125988.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_21620 | Not Available | Positive | 5001769 - 5003406 | 62621.4 |
| hypothetical protein | DW869_21625 | Not Available | Positive | 5003504 - 5005063 | 59338.5 |
| hypothetical protein | DW869_21635 | Not Available | Negative | 5006447 - 5006785 | 13093.7 |
| hypothetical protein | DW869_21640 | Not Available | Negative | 5007417 - 5009792 | 90239.1 |
| xre family transcriptional regulator | DW869_21645 | Not Available | Negative | 5009918 - 5010127 | 7820.67 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

