Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna repair protein recn | DW869_01990 | Not Available | Negative | 492039 - 493700 | 62006.0 |
| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase coabc | DW869_01995 | Not Available | Negative | 493816 - 495012 | 43166.3 |
| 3'-5' exonuclease | DW869_02000 | Not Available | Negative | 495009 - 495785 | 29605.2 |
| dna polymerase iii subunit beta | DW869_02005 | Not Available | Negative | 495837 - 496961 | 41323.5 |
| duf3127 domain-containing protein | DW869_02010 | Not Available | Positive | 497115 - 497492 | 13929.4 |
| duf4270 domain-containing protein | DW869_02015 | Not Available | Negative | 497742 - 499172 | 53575.2 |
| glycogen synthase | DW869_02020 | Not Available | Negative | 499192 - 500016 | 31933.0 |
| pantoate--beta-alanine ligase | DW869_02025 | Not Available | Positive | 500369 - 501217 | 31339.6 |
| aspartate 1-decarboxylase | DW869_02030 | Not Available | Positive | 501239 - 501589 | 12822.7 |
| fructose-bisphosphatase class iii | DW869_02035 | Not Available | Negative | 501719 - 503719 | 76533.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

