Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate kinase | DW869_21335 | Not Available | Positive | 4936909 - 4938228 | 49296.1 |
| diaminopimelate decarboxylase | DW869_21340 | Not Available | Positive | 4938336 - 4939496 | 42749.4 |
| hypothetical protein | DW869_21345 | Not Available | Negative | 4939621 - 4939818 | 7157.55 |
| xre family transcriptional regulator | DW869_21350 | Not Available | Negative | 4939827 - 4940063 | 8847.73 |
| hypothetical protein | DW869_21355 | Not Available | Positive | 4940414 - 4942999 | 98123.1 |
| aaa family atpase | DW869_21360 | Not Available | Negative | 4943029 - 4944018 | 38156.9 |
| hypothetical protein | DW869_21365 | Not Available | Negative | 4944213 - 4944968 | 29584.6 |
| site-specific integrase | DW869_21370 | Not Available | Positive | 4945519 - 4946454 | 36310.9 |
| upxy family transcription antiterminator | DW869_21375 | Not Available | Positive | 4946781 - 4947431 | 24665.1 |
| hypothetical protein | DW869_21380 | Not Available | Positive | 4947449 - 4947883 | 16620.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

