Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| port family protein | DW869_21285 | Not Available | Negative | 4930008 - 4930688 | 25469.0 |
| transposase | DW869_21290 | Not Available | Negative | 4930956 - 4931591 | 24966.0 |
| Trna-asp | Not Available | Not Available | Positive | 4931850 - 4931923 | Not Available |
| Trna-asp | Not Available | Not Available | Positive | 4931950 - 4932026 | Not Available |
| formyltetrahydrofolate deformylase | DW869_21305 | Not Available | Positive | 4932291 - 4933148 | 33273.6 |
| imidazole glycerol phosphate synthase subunit hish | DW869_21310 | Not Available | Positive | 4933148 - 4933738 | 22270.8 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | DW869_21315 | Not Available | Positive | 4933780 - 4934499 | 26636.3 |
| imidazole glycerol phosphate synthase subunit hisf | DW869_21320 | Not Available | Positive | 4934509 - 4935264 | 27219.5 |
| bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase hisie | DW869_21325 | Not Available | Positive | 4935429 - 4936040 | 23137.6 |
| atp-binding cassette domain-containing protein | DW869_21330 | Not Available | Positive | 4936046 - 4936801 | 28405.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

