Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | DW869_21235 | Not Available | Positive | 4913936 - 4915429 | 54449.7 |
| is110 family transposase | DW869_21240 | Not Available | Negative | 4915600 - 4916565 | 35654.6 |
| endo-1,4-beta-xylanase | DW869_21245 | Not Available | Positive | 4916778 - 4917899 | 42056.4 |
| alpha-n-arabinofuranosidase | DW869_21250 | Not Available | Positive | 4917912 - 4918883 | 36792.0 |
| glycoside hydrolase family 43 protein | DW869_21255 | Not Available | Positive | 4919233 - 4920969 | 64662.4 |
| tonb-dependent receptor | DW869_21260 | Not Available | Positive | 4921011 - 4924082 | 113114.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_21265 | Not Available | Positive | 4924097 - 4926031 | 71613.1 |
| hypothetical protein | DW869_21270 | Not Available | Positive | 4926036 - 4926259 | 9004.22 |
| hypothetical protein | DW869_21275 | Not Available | Positive | 4926488 - 4926916 | 16662.0 |
| beta-galactosidase | DW869_21280 | Not Available | Negative | 4927676 - 4929715 | 78172.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

