Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 6-carboxytetrahydropterin synthase qued | DW869_20845 | Not Available | Positive | 4833581 - 4833913 | 12835.3 |
| radical sam protein | DW869_20850 | Not Available | Positive | 4833900 - 4834445 | 20465.4 |
| Trna-trp | Not Available | Not Available | Positive | 4834502 - 4834577 | Not Available |
| uracil-dna glycosylase family protein | DW869_20860 | Not Available | Negative | 4834645 - 4835238 | 23044.2 |
| hypothetical protein | DW869_20865 | Not Available | Negative | 4835253 - 4835879 | 24334.1 |
| alanine:cation symporter family protein | DW869_20870 | Not Available | Negative | 4836013 - 4837413 | 51010.3 |
| atp-binding protein | DW869_20875 | Not Available | Negative | 4837419 - 4838066 | 24840.1 |
| helix-turn-helix domain-containing protein | DW869_20880 | Not Available | Positive | 4838199 - 4842158 | 149469.0 |
| n-acetyltransferase | DW869_20885 | Not Available | Positive | 4842308 - 4842586 | 10613.8 |
| serine dehydratase subunit alpha family protein | DW869_20890 | Not Available | Negative | 4842661 - 4843956 | 46076.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

