Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetylmuramoyl-l-alanine amidase | DW869_20735 | Not Available | Positive | 4810129 - 4810542 | 15287.5 |
| extracellular solute-binding protein | DW869_20745 | Not Available | Negative | 4810983 - 4812317 | 51338.6 |
| abc transporter permease | DW869_20750 | Not Available | Negative | 4812321 - 4813112 | 28734.3 |
| abc transporter permease | DW869_20755 | Not Available | Negative | 4813106 - 4813879 | 28498.6 |
| polyamine abc transporter atp-binding protein | DW869_20760 | Not Available | Negative | 4813916 - 4815304 | 51886.3 |
| ahpc/tsa family protein | DW869_20770 | Not Available | Positive | 4815833 - 4816924 | 40190.0 |
| alpha-glucan family phosphorylase | DW869_20775 | Not Available | Negative | 4817151 - 4819715 | 98180.8 |
| glycosyl transferase | DW869_20780 | Not Available | Negative | 4819744 - 4821414 | 63540.8 |
| v-type atp synthase subunit k | DW869_20785 | Not Available | Negative | 4821669 - 4822133 | 15421.2 |
| v-type atp synthase subunit i | DW869_20790 | Not Available | Negative | 4822347 - 4824152 | 67265.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

