Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor | DW869_20675 | Not Available | Negative | 4800297 - 4800857 | 21746.7 |
| hypothetical protein | DW869_20680 | Not Available | Negative | 4801059 - 4801301 | 9349.64 |
| type iv secretory system conjugative dna transfer family protein | DW869_20685 | Not Available | Negative | 4801446 - 4803068 | 61103.6 |
| mobilization protein | DW869_20690 | Not Available | Negative | 4803083 - 4804018 | 36546.9 |
| hypothetical protein | DW869_20700 | Not Available | Negative | 4804387 - 4804899 | 19334.5 |
| hypothetical protein | DW869_20705 | Not Available | Negative | 4805373 - 4805594 | 8728.56 |
| is21 family transposase | DW869_20710 | Not Available | Positive | 4806278 - 4807852 | 62133.4 |
| atp-binding protein | DW869_20715 | Not Available | Positive | 4807849 - 4808628 | 30223.9 |
| duf4248 domain-containing protein | DW869_20725 | Not Available | Negative | 4808986 - 4809225 | 9222.05 |
| dna-binding protein | DW869_20730 | Not Available | Positive | 4809506 - 4809979 | 16847.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

