Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | DW869_20620 | Not Available | Positive | 4781445 - 4783757 | 87530.2 |
| hypothetical protein | DW869_20625 | Not Available | Negative | 4783818 - 4784255 | 17453.3 |
| fused gamma-glutamyl-gamma-aminobutyrate hydrolase/peptidase | DW869_20630 | Not Available | Negative | 4784532 - 4786388 | 68663.0 |
| pyruvate, phosphate dikinase | DW869_20635 | Not Available | Negative | 4786521 - 4789247 | 100098.0 |
| 23s rrna (uracil(1939)-c(5))-methyltransferase rlmd | DW869_20640 | Not Available | Positive | 4789446 - 4790867 | 54000.1 |
| rlua family pseudouridine synthase | DW869_20645 | Not Available | Positive | 4790912 - 4791838 | 35718.2 |
| arylsulfatase | DW869_20655 | Not Available | Negative | 4792522 - 4794090 | 58020.9 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_20660 | Not Available | Negative | 4794172 - 4795812 | 62927.7 |
| susc/raga family tonb-linked outer membrane protein | DW869_20665 | Not Available | Negative | 4795819 - 4799115 | 121137.0 |
| fecr family protein | DW869_20670 | Not Available | Negative | 4799217 - 4800251 | 40070.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

