Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i restriction-modification system subunit m | DW869_20465 | Not Available | Negative | 4742626 - 4744176 | 58526.6 |
| giy-yig nuclease family protein | DW869_20470 | Not Available | Negative | 4744180 - 4744935 | 29519.0 |
| hypothetical protein | DW869_20475 | Not Available | Negative | 4744942 - 4745601 | 25436.0 |
| type i restriction endonuclease subunit r | DW869_20480 | Not Available | Negative | 4745604 - 4748429 | 109075.0 |
| xre family transcriptional regulator | DW869_20485 | Not Available | Negative | 4748452 - 4748751 | 11305.9 |
| site-specific integrase | DW869_20490 | Not Available | Negative | 4748971 - 4750128 | 44272.9 |
| site-specific integrase | DW869_20495 | Not Available | Negative | 4750149 - 4751312 | 44747.1 |
| hypothetical protein | DW869_20500 | Not Available | Positive | 4751607 - 4752615 | 37510.0 |
| hypothetical protein | DW869_20510 | Not Available | Negative | 4753123 - 4754598 | 55372.9 |
| hypothetical protein | DW869_20515 | Not Available | Negative | 4754720 - 4756177 | 54555.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

