Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna alkylation repair protein | DW869_20405 | Not Available | Positive | 4729368 - 4730036 | 25716.3 |
| transcriptional repressor | DW869_20410 | Not Available | Positive | 4730067 - 4730558 | 19166.0 |
| adenylosuccinate synthetase | DW869_20415 | Not Available | Positive | 4730575 - 4731846 | 46822.9 |
| helicase | DW869_20425 | Not Available | Positive | 4733576 - 4734817 | 48348.8 |
| dna primase | DW869_20430 | Not Available | Positive | 4735072 - 4736040 | 37238.7 |
| mobilization protein | DW869_20435 | Not Available | Positive | 4736234 - 4737601 | 52691.8 |
| mfs transporter | DW869_20440 | Not Available | Negative | 4737691 - 4738917 | 44282.7 |
| type i restriction endonuclease subunit s | DW869_20450 | Not Available | Positive | 4739931 - 4740452 | 19391.6 |
| restriction endonuclease subunit s | DW869_20455 | Not Available | Negative | 4740445 - 4741629 | 44065.2 |
| orf6n domain-containing protein | DW869_20460 | Not Available | Negative | 4741635 - 4742573 | 36169.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

