Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-isopropylmalate dehydratase small subunit | DW869_20355 | Not Available | Positive | 4716676 - 4717272 | 22479.6 |
| 2-isopropylmalate synthase | DW869_20360 | Not Available | Positive | 4717278 - 4718798 | 56824.1 |
| 3-isopropylmalate dehydrogenase | DW869_20365 | Not Available | Positive | 4718892 - 4719953 | 39089.9 |
| ahpc/tsa family protein | DW869_20370 | Not Available | Positive | 4720085 - 4721230 | 42890.5 |
| peptide-methionine (s)-s-oxide reductase | DW869_20375 | Not Available | Negative | 4721299 - 4721784 | 18625.0 |
| tetratricopeptide repeat protein | DW869_20380 | Not Available | Positive | 4721902 - 4722756 | 32554.4 |
| is1182 family transposase | DW869_20385 | Not Available | Negative | 4722948 - 4724459 | 59191.7 |
| dna helicase recq | DW869_20390 | Not Available | Negative | 4724625 - 4726442 | 69130.0 |
| arac family transcriptional regulator | DW869_20395 | Not Available | Positive | 4726774 - 4727241 | 18149.8 |
| dihydrofolate reductase | DW869_20400 | Not Available | Positive | 4727347 - 4729359 | 76580.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

