Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4249 domain-containing protein | DW869_20185 | Not Available | Positive | 4673314 - 4674345 | 39226.1 |
| sialate o-acetylesterase | DW869_20190 | Not Available | Negative | 4674377 - 4676314 | 72361.4 |
| alpha-glucuronidase | DW869_20195 | Not Available | Negative | 4676342 - 4678387 | 77077.0 |
| glycosyhydrolase | DW869_20200 | Not Available | Negative | 4678384 - 4680978 | 99341.8 |
| glycoside hydrolase | DW869_20205 | Not Available | Negative | 4680991 - 4682574 | 60361.7 |
| glycoside hydrolase | DW869_20210 | Not Available | Negative | 4682583 - 4685090 | 94366.4 |
| response regulator | DW869_20220 | Not Available | Positive | 4685327 - 4689379 | 154961.0 |
| phosphodiester glycosidase family protein | DW869_20230 | Not Available | Negative | 4690365 - 4691228 | 31291.2 |
| phosphodiester glycosidase family protein | DW869_20235 | Not Available | Negative | 4691221 - 4692147 | 33916.9 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_20240 | Not Available | Negative | 4692313 - 4693620 | 49282.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

