Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding protein | DW869_20085 | Not Available | Negative | 4651307 - 4651735 | 15522.9 |
| duf4248 domain-containing protein | DW869_20090 | Not Available | Positive | 4651984 - 4652214 | 8949.8 |
| duf3987 domain-containing protein | DW869_20095 | Not Available | Negative | 4652365 - 4654743 | 89945.3 |
| hypothetical protein | DW869_20100 | Not Available | Negative | 4654942 - 4655139 | 7987.94 |
| upxy family transcription antiterminator | DW869_20105 | Not Available | Positive | 4655417 - 4655917 | 19048.7 |
| nucleotidyltransferase domain-containing protein | DW869_20110 | Not Available | Positive | 4655985 - 4656275 | 10799.2 |
| toxin-antitoxin system antitoxin subunit | DW869_20115 | Not Available | Positive | 4656272 - 4656757 | 19033.9 |
| nucleotide sugar dehydrogenase | DW869_20120 | Not Available | Positive | 4657304 - 4658554 | 46935.0 |
| 4fe-4s dicluster domain-containing protein | DW869_20125 | Not Available | Positive | 4658660 - 4659793 | 42685.5 |
| duf2264 domain-containing protein | DW869_20130 | Not Available | Positive | 4659790 - 4661625 | 71786.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

