Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW869_01835 | Not Available | Positive | 458883 - 460052 | 45067.2 |
| dicarboxylate/amino acid:cation symporter | DW869_01840 | Not Available | Negative | 460257 - 461435 | 42070.5 |
| decarboxylating nadp(+)-dependent phosphogluconate dehydrogenase | DW869_01845 | Not Available | Positive | 461520 - 462956 | 53121.0 |
| glucose-6-phosphate dehydrogenase | DW869_01850 | Not Available | Positive | 463005 - 464513 | 58278.9 |
| 6-phosphogluconolactonase | DW869_01855 | Not Available | Positive | 464575 - 465279 | 26385.2 |
| cytochrome d ubiquinol oxidase subunit ii | DW869_01860 | Not Available | Negative | 465575 - 466720 | 42812.5 |
| cytochrome ubiquinol oxidase subunit i | DW869_01865 | Not Available | Negative | 466875 - 468377 | 55127.9 |
| duf4492 domain-containing protein | DW869_01870 | Not Available | Negative | 468401 - 468619 | 8685.8 |
| tolc family protein | DW869_01875 | Not Available | Positive | 468773 - 470116 | 50278.3 |
| efflux rnd transporter periplasmic adaptor subunit | DW869_01880 | Not Available | Positive | 470141 - 471364 | 44075.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

