Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-54-dependent fis family transcriptional regulator | DW869_19720 | Not Available | Negative | 4576026 - 4577357 | 50256.9 |
| tolc family protein | DW869_19725 | Not Available | Positive | 4577689 - 4578996 | 50664.0 |
| efflux rnd transporter periplasmic adaptor subunit | DW869_19730 | Not Available | Positive | 4579002 - 4580252 | 47799.6 |
| abc transporter atp-binding protein | DW869_19735 | Not Available | Positive | 4580268 - 4580978 | 26379.0 |
| abc transporter permease | DW869_19740 | Not Available | Positive | 4580978 - 4583398 | 91819.4 |
| is21 family transposase | DW869_19745 | Not Available | Positive | 4584522 - 4586087 | 60435.6 |
| atp-binding protein | DW869_19750 | Not Available | Positive | 4586099 - 4586887 | 29651.8 |
| hypothetical protein | DW869_19755 | Not Available | Negative | 4586865 - 4587061 | 7572.19 |
| site-specific integrase | DW869_19760 | Not Available | Negative | 4587189 - 4588307 | 43299.0 |
| holliday junction branch migration dna helicase ruvb | DW869_19765 | Not Available | Positive | 4588434 - 4589462 | 38022.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

