Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-iminoacetate synthase thih | DW869_19615 | Not Available | Negative | 4559808 - 4560938 | 43251.8 |
| flavodoxin family protein | DW869_19620 | Not Available | Negative | 4561027 - 4561599 | 21329.5 |
| phosphomethylpyrimidine synthase thic | DW869_19630 | Not Available | Negative | 4562134 - 4563834 | 63476.9 |
| thiazole synthase | DW869_19635 | Not Available | Negative | 4563843 - 4564616 | 27537.5 |
| thiamine phosphate synthase | DW869_19640 | Not Available | Negative | 4564634 - 4565260 | 23079.1 |
| sulfur carrier protein this | DW869_19645 | Not Available | Negative | 4565250 - 4565450 | 7153.82 |
| superoxide dismutase | DW869_19650 | Not Available | Negative | 4565836 - 4566453 | 23314.6 |
| atp-dependent dna helicase | DW869_19655 | Not Available | Positive | 4566562 - 4568952 | 91472.8 |
| carboxynorspermidine decarboxylase | DW869_19660 | Not Available | Positive | 4568985 - 4570148 | 44398.1 |
| Trna-gly | Not Available | Not Available | Positive | 4570322 - 4570394 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

