Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hu family dna-binding protein | DW869_19415 | Not Available | Negative | 4530603 - 4530881 | 10589.0 |
| hypothetical protein | DW869_19420 | Not Available | Negative | 4530893 - 4531246 | 13934.3 |
| dna topoisomerase i | DW869_19425 | Not Available | Negative | 4531243 - 4532079 | 31691.2 |
| plasmid transfer protein | DW869_19430 | Not Available | Negative | 4532080 - 4532787 | 26606.8 |
| hypothetical protein | DW869_19435 | Not Available | Negative | 4532768 - 4533271 | 20038.8 |
| duf3991 domain-containing protein | DW869_19440 | Not Available | Negative | 4533268 - 4534377 | 42741.0 |
| duf3945 domain-containing protein | DW869_19445 | Not Available | Negative | 4534382 - 4535941 | 58899.6 |
| duf4099 domain-containing protein | DW869_19450 | Not Available | Negative | 4535943 - 4536722 | 30057.6 |
| m23 family peptidase | DW869_19455 | Not Available | Positive | 4536703 - 4537368 | 25188.4 |
| zeta toxin family protein | DW869_19460 | Not Available | Negative | 4537415 - 4538281 | 32862.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

