Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-binding protein | DW869_19250 | Not Available | Negative | 4503722 - 4505023 | 48986.9 |
| sigma-54-dependent fis family transcriptional regulator | DW869_19255 | Not Available | Negative | 4505139 - 4506479 | 50193.7 |
| aaa family atpase | DW869_19260 | Not Available | Negative | 4506516 - 4508288 | 68945.8 |
| hypothetical protein | DW869_19265 | Not Available | Negative | 4508292 - 4508507 | 8524.67 |
| glutathione peroxidase | DW869_19270 | Not Available | Positive | 4508498 - 4509037 | 20074.2 |
| hypothetical protein | DW869_19275 | Not Available | Negative | 4509068 - 4509295 | 8602.18 |
| duf3990 domain-containing protein | DW869_19280 | Not Available | Negative | 4509292 - 4509765 | 18445.0 |
| duf3791 domain-containing protein | DW869_19285 | Not Available | Negative | 4509762 - 4510190 | 15954.4 |
| duf2442 domain-containing protein | DW869_19290 | Not Available | Positive | 4510501 - 4510917 | 16026.2 |
| upxy family transcription antiterminator | DW869_19300 | Not Available | Positive | 4511910 - 4512458 | 21158.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

