Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW869_19200 | Not Available | Positive | 4487946 - 4489283 | 51350.1 |
| hypothetical protein | DW869_19205 | Not Available | Positive | 4489292 - 4490113 | 32905.3 |
| Trna-thr | Not Available | Not Available | Positive | 4490948 - 4491023 | Not Available |
| tigr03905 family tscpd domain-containing protein | DW869_19215 | Not Available | Negative | 4491229 - 4491474 | 9080.04 |
| yebc/pmpr family dna-binding transcriptional regulator | DW869_19220 | Not Available | Negative | 4491476 - 4492216 | 27834.7 |
| phenylalanine--trna ligase subunit beta | DW869_19225 | Not Available | Negative | 4492250 - 4494712 | 91179.9 |
| replicative dna helicase | DW869_19230 | Not Available | Negative | 4494866 - 4496422 | 57459.0 |
| 4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinase | DW869_19235 | Not Available | Positive | 4496684 - 4497511 | 30687.1 |
| pd-(d/e)xk nuclease family protein | DW869_19240 | Not Available | Negative | 4497586 - 4500465 | 110985.0 |
| atp-dependent helicase | DW869_19245 | Not Available | Negative | 4500465 - 4503641 | 122721.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

