Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pspc domain-containing protein | DW869_01725 | Not Available | Positive | 434637 - 435683 | 38246.6 |
| formate-dependent phosphoribosylglycinamide formyltransferase | DW869_01730 | Not Available | Positive | 435781 - 436950 | 42895.6 |
| rhomboid family intramembrane serine protease | DW869_01735 | Not Available | Negative | 437433 - 438098 | 25240.1 |
| 4-alpha-glucanotransferase | DW869_01740 | Not Available | Positive | 438279 - 440219 | 74889.3 |
| glycosyltransferase family 1 protein | DW869_01745 | Not Available | Positive | 440234 - 441499 | 47628.2 |
| alpha-amylase | DW869_01750 | Not Available | Positive | 441518 - 442930 | 53776.4 |
| hypothetical protein | DW869_01755 | Not Available | Positive | 443083 - 443448 | 13953.2 |
| biotin synthase biob | DW869_01760 | Not Available | Positive | 443461 - 444420 | 35602.0 |
| adenosylmethionine--8-amino-7-oxononanoate transaminase | DW869_01765 | Not Available | Positive | 444459 - 445730 | 47780.3 |
| 8-amino-7-oxononanoate synthase | DW869_01770 | Not Available | Positive | 445758 - 446909 | 43054.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

