Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| colanic acid biosynthesis acetyltransferase wcaf | DW869_18615 | Not Available | Positive | 4379530 - 4380078 | 20500.0 |
| glycosyltransferase | DW869_18620 | Not Available | Positive | 4380096 - 4380887 | 30581.7 |
| gdp-mannose 4,6-dehydratase | DW869_18625 | Not Available | Positive | 4380884 - 4381969 | 41073.8 |
| gdp-l-fucose synthase | DW869_18630 | Not Available | Positive | 4381966 - 4382910 | 35749.9 |
| cupin domain-containing protein | DW869_18640 | Not Available | Positive | 4383391 - 4384740 | 50872.7 |
| duf4251 domain-containing protein | DW869_18655 | Not Available | Negative | 4386186 - 4386740 | 20105.3 |
| dna methylase | DW869_18660 | Not Available | Positive | 4387325 - 4390532 | 122156.0 |
| hypothetical protein | DW869_18665 | Not Available | Positive | 4390985 - 4391509 | 20819.9 |
| hypothetical protein | DW869_18670 | Not Available | Positive | 4391539 - 4391949 | 15880.5 |
| hypothetical protein | DW869_18675 | Not Available | Positive | 4392096 - 4392314 | 7465.99 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

