Phocaeicola vulgatus strain AM38-19

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AM38-19 is a Gram-positive, anaerobic, rod-shaped bacterium associated with the host Homo sapiens. It exhibits a cell arrangement characterized by singles and does not possess mobility, despite having flagella. This strain is mesophilic, thriving within a temperature range conducive to growth in moderate environments. The bacterium is notable for its biotic relationship as a free-living organism, suggesting it can survive independently, but it is also commonly found in association with human hosts. Phocaeicola vulgatus has a single replicon and is characterized by having two membranes, which is typical for Gram-positive bacteria. Given its anaerobic nature, Phocaeicola vulgatus strain AM38-19 plays a critical role in the human microbiome, particularly in anaerobic environments such as the gastrointestinal tract. The ability to thrive in these conditions may contribute to its ecological role in digestion and nutrient absorption, as well as its potential influence on human health. Understanding the traits and ecological interactions of this strain can provide insights into its contributions to gut microbiota dynamics and overall host health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AM38-19

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AM38-19
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AM38-19 AM38-19.Scaf101, whole genome

Gene Summary

Adenine Count

1498710 bp

Thymine Count

1452742 bp

Guanine Count

1040716 bp

Cytosine Count

1113152 bp

Genome Length

5106187 bp

Protein-coding Genes

4161 genes

Non-Coding Genes

82 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
radical sam proteinDW869_18340Not AvailableNegative4334466 - 433534733132.9
glycosyltransferase family 2 proteinDW869_18345Not AvailableNegative4335435 - 433646039378.6
trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferase mtabDW869_18350Not AvailableNegative4336496 - 433781249152.8
long-chain fatty acid--coa ligaseDW869_18355Not AvailablePositive4337918 - 433959163271.5
hypothetical proteinDW869_18360Not AvailablePositive4339752 - 43399526663.71
hypothetical proteinDW869_18365Not AvailablePositive4340107 - 434079926978.2
50s ribosomal protein l9DW869_18370Not AvailableNegative4340869 - 434131216159.9
30s ribosomal protein s18DW869_18375Not AvailableNegative4341328 - 434159710561.2
30s ribosomal protein s6DW869_18380Not AvailableNegative4341600 - 434194413428.3
marr family transcriptional regulatorDW869_18385Not AvailablePositive4342154 - 434260017228.0

Displaying genes 3521 – 3530 of 4243 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.