Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| radical sam protein | DW869_18340 | Not Available | Negative | 4334466 - 4335347 | 33132.9 |
| glycosyltransferase family 2 protein | DW869_18345 | Not Available | Negative | 4335435 - 4336460 | 39378.6 |
| trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferase mtab | DW869_18350 | Not Available | Negative | 4336496 - 4337812 | 49152.8 |
| long-chain fatty acid--coa ligase | DW869_18355 | Not Available | Positive | 4337918 - 4339591 | 63271.5 |
| hypothetical protein | DW869_18360 | Not Available | Positive | 4339752 - 4339952 | 6663.71 |
| hypothetical protein | DW869_18365 | Not Available | Positive | 4340107 - 4340799 | 26978.2 |
| 50s ribosomal protein l9 | DW869_18370 | Not Available | Negative | 4340869 - 4341312 | 16159.9 |
| 30s ribosomal protein s18 | DW869_18375 | Not Available | Negative | 4341328 - 4341597 | 10561.2 |
| 30s ribosomal protein s6 | DW869_18380 | Not Available | Negative | 4341600 - 4341944 | 13428.3 |
| marr family transcriptional regulator | DW869_18385 | Not Available | Positive | 4342154 - 4342600 | 17228.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

