Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| indolepyruvate ferredoxin oxidoreductase subunit alpha | DW869_18190 | Not Available | Negative | 4302882 - 4304498 | 58773.4 |
| amidohydrolase | DW869_18195 | Not Available | Negative | 4304522 - 4305283 | 28449.8 |
| atp-dependent helicase | DW869_18200 | Not Available | Negative | 4305513 - 4307915 | 91102.7 |
| aaa family atpase | DW869_18205 | Not Available | Negative | 4308055 - 4309623 | 60467.9 |
| hypothetical protein | DW869_18210 | Not Available | Negative | 4309700 - 4310512 | 30752.3 |
| glycosyltransferase | DW869_18215 | Not Available | Negative | 4310517 - 4311233 | 27619.6 |
| hypothetical protein | DW869_18220 | Not Available | Positive | 4311288 - 4311602 | 12249.5 |
| duf86 domain-containing protein | DW869_18225 | Not Available | Negative | 4311630 - 4312013 | 14546.1 |
| dna polymerase subunit beta | DW869_18230 | Not Available | Negative | 4312006 - 4312299 | 11179.7 |
| glycosyltransferase | DW869_18235 | Not Available | Negative | 4312399 - 4313036 | 24322.2 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

