Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-1,3-galactosidase b | DW869_18140 | Not Available | Negative | 4287502 - 4289319 | 69024.9 |
| xanthan lyase | DW869_18145 | Not Available | Positive | 4289402 - 4292272 | 106950.0 |
| hypothetical protein | DW869_18150 | Not Available | Positive | 4292363 - 4292680 | 12230.6 |
| ygiq family radical sam protein | DW869_18155 | Not Available | Positive | 4292732 - 4294618 | 72051.8 |
| sodium-translocating pyrophosphatase | DW869_18160 | Not Available | Positive | 4294875 - 4297079 | 77023.8 |
| hypothetical protein | DW869_18165 | Not Available | Negative | 4297149 - 4298933 | 69317.9 |
| amino acid-binding protein | DW869_18170 | Not Available | Negative | 4299169 - 4299585 | 15370.7 |
| phenylacetate--coa ligase | DW869_18175 | Not Available | Negative | 4299599 - 4300900 | 48582.5 |
| pyridoxal phosphate-dependent aminotransferase | DW869_18180 | Not Available | Negative | 4300995 - 4302299 | 48672.3 |
| indolepyruvate oxidoreductase subunit beta | DW869_18185 | Not Available | Negative | 4302304 - 4302885 | 21245.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

